# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""Utilities for dealing with HEALPix projections and mappings."""
import copy
import numpy as np
from astropy import units as u
from astropy.coordinates import SkyCoord
from astropy.io import fits
from astropy.units import Quantity
from gammapy.utils.array import is_power2
from ..axes import MapAxes
from ..coord import MapCoord, skycoord_to_lonlat
from ..geom import Geom, pix_tuple_to_idx
from ..utils import INVALID_INDEX, coordsys_to_frame, frame_to_coordsys
from .io import HPX_FITS_CONVENTIONS, HpxConv
from .utils import (
coords_to_vec,
get_nside_from_pix_size,
get_pix_size_from_nside,
get_subpixels,
get_superpixels,
match_hpx_pix,
nside_to_order,
parse_hpxregion,
ravel_hpx_index,
unravel_hpx_index,
)
# Not sure if we should expose this in the docs or not:
# HPX_FITS_CONVENTIONS, HpxConv
__all__ = ["HpxGeom"]
[docs]class HpxGeom(Geom):
"""Geometry class for HEALPIX maps.
This class performs mapping between partial-sky indices (pixel
number within a HEALPIX region) and all-sky indices (pixel number
within an all-sky HEALPIX map). Multi-band HEALPIX geometries use
a global indexing scheme that assigns a unique pixel number based
on the all-sky index and band index. In the single-band case the
global index is the same as the HEALPIX index.
By default the constructor will return an all-sky map.
Partial-sky maps can be defined with the ``region`` argument.
Parameters
----------
nside : `~numpy.ndarray`
HEALPIX nside parameter, the total number of pixels is
12*nside*nside. For multi-dimensional maps one can pass
either a single nside value or a vector of nside values
defining the pixel size for each image plane. If nside is not
a scalar then its dimensionality should match that of the
non-spatial axes. If nest is True, nside must be a power of 2,
less than 2**30.
nest : bool
True -> 'NESTED', False -> 'RING' indexing scheme
frame : str
Coordinate system, "icrs" | "galactic"
region : str or tuple
Spatial geometry for partial-sky maps. If none the map will
encompass the whole sky. String input will be parsed
according to HPX_REG header keyword conventions. Tuple
input can be used to define an explicit list of pixels
encompassed by the geometry.
axes : list
Axes for non-spatial dimensions.
"""
is_hpx = True
is_region = False
def __init__(self, nside, nest=True, frame="icrs", region=None, axes=None):
from healpy.pixelfunc import check_nside
check_nside(nside, nest=nest)
self._nside = np.array(nside, ndmin=1)
self._axes = MapAxes.from_default(axes, n_spatial_axes=1)
if self.nside.size > 1 and self.nside.shape != self.shape_axes:
raise ValueError(
"Wrong dimensionality for nside. nside must "
"be a scalar or have a dimensionality consistent "
"with the axes argument."
)
self._frame = frame
self._nest = nest
self._ipix = None
self._region = region
self._create_lookup(region)
self._npix = self._npix * np.ones(self.shape_axes, dtype=int)
def _create_lookup(self, region):
"""Create local-to-global pixel lookup table."""
if isinstance(region, str):
ipix = [
self.get_index_list(nside, self._nest, region)
for nside in self._nside.flat
]
self._ipix = [
ravel_hpx_index((p, i * np.ones_like(p)), np.ravel(self.npix_max))
for i, p in enumerate(ipix)
]
self._region = region
self._indxschm = "EXPLICIT"
self._npix = np.array([len(t) for t in self._ipix])
if self.nside.ndim > 1:
self._npix = self._npix.reshape(self.nside.shape)
self._ipix = np.concatenate(self._ipix)
elif isinstance(region, tuple):
region = [np.asarray(t) for t in region]
m = np.any(np.stack([t >= 0 for t in region]), axis=0)
region = [t[m] for t in region]
self._ipix = ravel_hpx_index(region, self.npix_max)
self._ipix = np.unique(self._ipix)
region = unravel_hpx_index(self._ipix, self.npix_max)
self._region = "explicit"
self._indxschm = "EXPLICIT"
if len(region) == 1:
self._npix = np.array([len(region[0])])
else:
self._npix = np.zeros(self.shape_axes, dtype=int)
idx = np.ravel_multi_index(region[1:], self.shape_axes)
cnt = np.unique(idx, return_counts=True)
self._npix.flat[cnt[0]] = cnt[1]
elif region is None:
self._region = None
self._indxschm = "IMPLICIT"
self._npix = self.npix_max
else:
raise ValueError(f"Invalid region string: {region!r}")
[docs] def local_to_global(self, idx_local):
"""Compute a local index (partial-sky) from a global (all-sky) index.
Returns
-------
idx_global : tuple
A tuple of pixel index vectors with global HEALPIX pixel indices
"""
if self._ipix is None:
return idx_local
if self.nside.size > 1:
idx = ravel_hpx_index(idx_local, self._npix)
else:
idx_tmp = tuple(
[idx_local[0]] + [np.zeros(t.shape, dtype=int) for t in idx_local[1:]]
)
idx = ravel_hpx_index(idx_tmp, self._npix)
idx_global = unravel_hpx_index(self._ipix[idx], self.npix_max)
return idx_global[:1] + tuple(idx_local[1:])
[docs] def global_to_local(self, idx_global, ravel=False):
"""Compute global (all-sky) index from a local (partial-sky) index.
Parameters
----------
idx_global : tuple
A tuple of pixel indices with global HEALPix pixel indices.
ravel : bool
Return a raveled index.
Returns
-------
idx_local : tuple
A tuple of pixel indices with local HEALPIX pixel indices.
"""
if (
isinstance(idx_global, int)
or (isinstance(idx_global, tuple) and isinstance(idx_global[0], int))
or isinstance(idx_global, np.ndarray)
):
idx_global = unravel_hpx_index(np.array(idx_global, ndmin=1), self.npix_max)
if self.nside.size == 1:
idx = np.array(idx_global[0], ndmin=1)
else:
idx = ravel_hpx_index(idx_global, self.npix_max)
if self._ipix is not None:
retval = np.full(idx.size, -1, "i")
m = np.isin(idx.flat, self._ipix)
retval[m] = np.searchsorted(self._ipix, idx.flat[m])
retval = retval.reshape(idx.shape)
else:
retval = idx
if self.nside.size == 1:
idx_local = tuple([retval] + list(idx_global[1:]))
else:
idx_local = unravel_hpx_index(retval, self._npix)
m = np.any(np.stack([t == INVALID_INDEX.int for t in idx_local]), axis=0)
for i, t in enumerate(idx_local):
idx_local[i][m] = INVALID_INDEX.int
if not ravel:
return idx_local
else:
return ravel_hpx_index(idx_local, self.npix)
[docs] def cutout(self, position, width, **kwargs):
"""Create a cutout around a given position.
Parameters
----------
position : `~astropy.coordinates.SkyCoord`
Center position of the cutout region.
width : `~astropy.coordinates.Angle` or `~astropy.units.Quantity`
Diameter of the circular cutout region.
Returns
-------
cutout : `~gammapy.maps.WcsNDMap`
Cutout map
"""
if not self.is_regular:
raise ValueError("Can only do a cutout from a regular map.")
width = u.Quantity(width, "deg").value
return self.create(
nside=self.nside,
nest=self.nest,
width=width,
skydir=position,
frame=self.frame,
axes=self.axes,
)
[docs] def coord_to_pix(self, coords):
import healpy as hp
coords = MapCoord.create(
coords, frame=self.frame, axis_names=self.axes.names
).broadcasted
theta, phi = coords.theta, coords.phi
if self.axes:
idxs = self.axes.coord_to_idx(coords, clip=True)
bins = self.axes.coord_to_pix(coords)
# FIXME: Figure out how to handle coordinates out of
# bounds of non-spatial dimensions
if self.nside.size > 1:
nside = self.nside[tuple(idxs)]
else:
nside = self.nside
m = ~np.isfinite(theta)
theta[m] = 0.0
phi[m] = 0.0
pix = hp.ang2pix(nside, theta, phi, nest=self.nest)
pix = tuple([pix]) + bins
if np.any(m):
for p in pix:
p[m] = INVALID_INDEX.int
else:
pix = (hp.ang2pix(self.nside, theta, phi, nest=self.nest),)
return pix
[docs] def pix_to_coord(self, pix):
import healpy as hp
if self.axes:
bins = []
vals = []
for i, ax in enumerate(self.axes):
bins += [pix[1 + i]]
vals += [ax.pix_to_coord(pix[1 + i])]
idxs = pix_tuple_to_idx(bins)
if self.nside.size > 1:
nside = self.nside[idxs]
else:
nside = self.nside
ipix = np.round(pix[0]).astype(int)
m = ipix == INVALID_INDEX.int
ipix[m] = 0
theta, phi = hp.pix2ang(nside, ipix, nest=self.nest)
coords = [np.degrees(phi), np.degrees(np.pi / 2.0 - theta)]
coords = tuple(coords + vals)
if np.any(m):
for c in coords:
c[m] = INVALID_INDEX.float
else:
ipix = np.round(pix[0]).astype(int)
theta, phi = hp.pix2ang(self.nside, ipix, nest=self.nest)
coords = (np.degrees(phi), np.degrees(np.pi / 2.0 - theta))
return coords
[docs] def pix_to_idx(self, pix, clip=False):
# FIXME: Look for better method to clip HPX indices
# TODO: copy idx to avoid modifying input pix?
# pix_tuple_to_idx seems to always make a copy!?
idx = pix_tuple_to_idx(pix)
idx_local = self.global_to_local(idx)
for i, _ in enumerate(idx):
if clip:
if i > 0:
np.clip(idx[i], 0, self.axes[i - 1].nbin - 1, out=idx[i])
else:
np.clip(idx[i], 0, None, out=idx[i])
else:
if i > 0:
mask = (idx[i] < 0) | (idx[i] >= self.axes[i - 1].nbin)
np.putmask(idx[i], mask, -1)
else:
mask = (idx_local[i] < 0) | (idx[i] < 0)
np.putmask(idx[i], mask, -1)
return tuple(idx)
@property
def axes(self):
"""List of non-spatial axes."""
return self._axes
@property
def axes_names(self):
"""All axes names"""
return ["skycoord"] + self.axes.names
@property
def shape_axes(self):
"""Shape of non-spatial axes."""
return self.axes.shape
@property
def data_shape(self):
"""Shape of the Numpy data array matching this geometry."""
npix_shape = tuple([np.max(self.npix)])
return (npix_shape + self.axes.shape)[::-1]
@property
def data_shape_axes(self):
"""Shape of data of the non-spatial axes and unit spatial axes."""
return self.axes.shape[::-1] + (1,)
@property
def ndim(self):
"""Number of dimensions (int)."""
return len(self._axes) + 2
@property
def ordering(self):
"""HEALPix ordering ('NESTED' or 'RING')."""
return "NESTED" if self.nest else "RING"
@property
def nside(self):
"""NSIDE in each band."""
return self._nside
@property
def order(self):
"""ORDER in each band (``NSIDE = 2 ** ORDER``).
Set to -1 for bands with NSIDE that is not a power of 2.
"""
return nside_to_order(self.nside)
@property
def nest(self):
"""Is HEALPix order nested? (bool)."""
return self._nest
@property
def npix(self):
"""Number of pixels in each band.
For partial-sky geometries this can
be less than the number of pixels for the band NSIDE.
"""
return self._npix
@property
def npix_max(self):
"""Max. number of pixels"""
maxpix = 12 * self.nside**2
return maxpix * np.ones(self.shape_axes, dtype=int)
@property
def frame(self):
return self._frame
@property
def projection(self):
"""Map projection."""
return "HPX"
@property
def region(self):
"""Region string."""
return self._region
@property
def is_allsky(self):
"""Flag for all-sky maps."""
return self._region is None
@property
def is_regular(self):
"""Flag identifying whether this geometry is regular in non-spatial dimensions.
False for multi-resolution or irregular geometries.
If true all image planes have the same pixel geometry.
"""
if self.nside.size > 1 or self.region == "explicit":
return False
else:
return True
@property
def center_coord(self):
"""Map coordinates of the center of the geometry (tuple)."""
lon, lat, frame = skycoord_to_lonlat(self.center_skydir)
return tuple([lon, lat]) + self.axes.center_coord
@property
def center_pix(self):
"""Pixel coordinates of the center of the geometry (tuple)."""
return self.coord_to_pix(self.center_coord)
@property
def center_skydir(self):
"""Sky coordinate of the center of the geometry.
Returns
-------
center : `~astropy.coordinates.SkyCoord`
Center position
"""
# TODO: simplify
import healpy as hp
if self.is_allsky:
lon, lat = 0.0, 0.0
elif self.region == "explicit":
idx = unravel_hpx_index(self._ipix, self.npix_max)
nside = self._get_nside(idx)
vec = hp.pix2vec(nside, idx[0], nest=self.nest)
vec = np.array([np.mean(t) for t in vec])
lonlat = hp.vec2ang(vec, lonlat=True)
lon, lat = lonlat[0], lonlat[1]
else:
tokens = parse_hpxregion(self.region)
if tokens[0] in ["DISK", "DISK_INC"]:
lon, lat = float(tokens[1]), float(tokens[2])
elif tokens[0] == "HPX_PIXEL":
nside_pix = int(tokens[2])
ipix_pix = int(tokens[3])
if tokens[1] == "NESTED":
nest_pix = True
elif tokens[1] == "RING":
nest_pix = False
else:
raise ValueError(f"Invalid ordering scheme: {tokens[1]!r}")
theta, phi = hp.pix2ang(nside_pix, ipix_pix, nest_pix)
lat = np.degrees((np.pi / 2) - theta)
lon = np.degrees(phi)
return SkyCoord(lon, lat, frame=self.frame, unit="deg")
@property
def pixel_scales(self):
self.angle_ = """Pixel scale.
Returns
-------
angle: `~astropy.coordinates.Angle`
"""
return get_pix_size_from_nside(self.nside) * u.deg
[docs] def interp_weights(self, coords, idxs=None):
"""Get interpolation weights for given coords
Parameters
----------
coords : `MapCoord` or dict
Input coordinates
idxs : `~numpy.ndarray`
Indices for non-spatial axes.
Returns
-------
weights : `~numpy.ndarray`
Interpolation weights
"""
import healpy as hp
coords = MapCoord.create(coords, frame=self.frame).broadcasted
if idxs is None:
idxs = self.coord_to_idx(coords, clip=True)[1:]
theta, phi = coords.theta, coords.phi
m = ~np.isfinite(theta)
theta[m] = 0
phi[m] = 0
if not self.is_regular:
nside = self.nside[tuple(idxs)]
else:
nside = self.nside
pix, wts = hp.get_interp_weights(nside, theta, phi, nest=self.nest)
wts[:, m] = 0
pix[:, m] = INVALID_INDEX.int
if not self.is_regular:
pix_local = [self.global_to_local([pix] + list(idxs))[0]]
else:
pix_local = [self.global_to_local(pix, ravel=True)]
# If a pixel lies outside of the geometry set its index to the center pixel
m = pix_local[0] == INVALID_INDEX.int
if m.any():
coords_ctr = [coords.lon, coords.lat]
coords_ctr += [ax.pix_to_coord(t) for ax, t in zip(self.axes, idxs)]
idx_ctr = self.coord_to_idx(coords_ctr)
idx_ctr = self.global_to_local(idx_ctr)
pix_local[0][m] = (idx_ctr[0] * np.ones(pix.shape, dtype=int))[m]
pix_local += [np.broadcast_to(t, pix_local[0].shape) for t in idxs]
return pix_local, wts
@property
def ipix(self):
"""HEALPIX pixel and band indices for every pixel in the map."""
return self.get_idx()
[docs] def is_aligned(self, other):
"""Check if HEALPIx geoms and extra axes are aligned.
Parameters
----------
other : `HpxGeom`
Other geom.
Returns
-------
aligned : bool
Whether geometries are aligned
"""
for axis, otheraxis in zip(self.axes, other.axes):
if axis != otheraxis:
return False
if not self.nside == other.nside:
return False
elif not self.frame == other.frame:
return False
elif not self.nest == other.nest:
return False
else:
return True
[docs] def to_nside(self, nside):
"""Upgrade or downgrade the reoslution to a given nside
Parameters
----------
nside : int
Nside
Returns
-------
geom : `~HpxGeom`
A HEALPix geometry object.
"""
if not self.is_regular:
raise ValueError("Upgrade and degrade only implemented for standard maps")
axes = copy.deepcopy(self.axes)
return self.__class__(
nside=nside, nest=self.nest, frame=self.frame, region=self.region, axes=axes
)
[docs] def to_binsz(self, binsz):
"""Change pixel size of the geometry.
Parameters
----------
binsz : float or `~astropy.units.Quantity`
New pixel size. A float is assumed to be in degree.
Returns
-------
geom : `WcsGeom`
Geometry with new pixel size.
"""
binsz = u.Quantity(binsz, "deg").value
if self.is_allsky:
return self.create(
binsz=binsz,
frame=self.frame,
axes=copy.deepcopy(self.axes),
)
else:
return self.create(
skydir=self.center_skydir,
binsz=binsz,
width=self.width.to_value("deg"),
frame=self.frame,
axes=copy.deepcopy(self.axes),
)
[docs] def separation(self, center):
"""Compute sky separation wrt a given center.
Parameters
----------
center : `~astropy.coordinates.SkyCoord`
Center position
Returns
-------
separation : `~astropy.coordinates.Angle`
Separation angle array (1D)
"""
coord = self.to_image().get_coord()
return center.separation(coord.skycoord)
[docs] def to_swapped(self):
"""Geometry copy with swapped ORDERING (NEST->RING or vice versa).
Returns
-------
geom : `~HpxGeom`
A HEALPix geometry object.
"""
axes = copy.deepcopy(self.axes)
return self.__class__(
self.nside,
not self.nest,
frame=self.frame,
region=self.region,
axes=axes,
)
[docs] def to_image(self):
return self.__class__(
np.max(self.nside), self.nest, frame=self.frame, region=self.region
)
[docs] def to_cube(self, axes):
axes = copy.deepcopy(self.axes) + axes
return self.__class__(
np.max(self.nside),
self.nest,
frame=self.frame,
region=self.region,
axes=axes,
)
def _get_neighbors(self, idx):
import healpy as hp
nside = self._get_nside(idx)
idx_nb = (hp.get_all_neighbours(nside, idx[0], nest=self.nest),)
idx_nb += tuple([t[None, ...] * np.ones_like(idx_nb[0]) for t in idx[1:]])
return idx_nb
def _pad_spatial(self, pad_width):
if self.is_allsky:
raise ValueError("Cannot pad an all-sky map.")
idx = self.get_idx(flat=True)
idx_r = ravel_hpx_index(idx, self.npix_max)
# TODO: Pre-filter indices to find those close to the edge
idx_nb = self._get_neighbors(idx)
idx_nb = ravel_hpx_index(idx_nb, self.npix_max)
for _ in range(pad_width):
mask_edge = np.isin(idx_nb, idx_r, invert=True)
idx_edge = idx_nb[mask_edge]
idx_edge = np.unique(idx_edge)
idx_r = np.sort(np.concatenate((idx_r, idx_edge)))
idx_nb = unravel_hpx_index(idx_edge, self.npix_max)
idx_nb = self._get_neighbors(idx_nb)
idx_nb = ravel_hpx_index(idx_nb, self.npix_max)
idx = unravel_hpx_index(idx_r, self.npix_max)
return self.__class__(
self.nside.copy(),
self.nest,
frame=self.frame,
region=idx,
axes=copy.deepcopy(self.axes),
)
[docs] def crop(self, crop_width):
if self.is_allsky:
raise ValueError("Cannot crop an all-sky map.")
idx = self.get_idx(flat=True)
idx_r = ravel_hpx_index(idx, self.npix_max)
# TODO: Pre-filter indices to find those close to the edge
idx_nb = self._get_neighbors(idx)
idx_nb = ravel_hpx_index(idx_nb, self.npix_max)
for _ in range(crop_width):
# Mask of pixels that have at least one neighbor not
# contained in the geometry
mask_edge = np.any(np.isin(idx_nb, idx_r, invert=True), axis=0)
idx_r = idx_r[~mask_edge]
idx_nb = idx_nb[:, ~mask_edge]
idx = unravel_hpx_index(idx_r, self.npix_max)
return self.__class__(
self.nside.copy(),
self.nest,
frame=self.frame,
region=idx,
axes=copy.deepcopy(self.axes),
)
[docs] def upsample(self, factor):
if not is_power2(factor):
raise ValueError("Upsample factor must be a power of 2.")
if self.is_allsky:
return self.__class__(
self.nside * factor,
self.nest,
frame=self.frame,
region=self.region,
axes=copy.deepcopy(self.axes),
)
idx = list(self.get_idx(flat=True))
nside = self._get_nside(idx)
idx_new = get_subpixels(idx[0], nside, nside * factor, nest=self.nest)
for i in range(1, len(idx)):
idx[i] = idx[i][..., None] * np.ones(idx_new.shape, dtype=int)
idx[0] = idx_new
return self.__class__(
self.nside * factor,
self.nest,
frame=self.frame,
region=tuple(idx),
axes=copy.deepcopy(self.axes),
)
[docs] def downsample(self, factor, axis_name=None):
if not is_power2(factor):
raise ValueError("Downsample factor must be a power of 2.")
if axis_name is not None:
raise ValueError("Currently the only valid axis name is None.")
if self.is_allsky:
return self.__class__(
self.nside // factor,
self.nest,
frame=self.frame,
region=self.region,
axes=copy.deepcopy(self.axes),
)
idx = list(self.get_idx(flat=True))
nside = self._get_nside(idx)
idx_new = get_superpixels(idx[0], nside, nside // factor, nest=self.nest)
idx[0] = idx_new
return self.__class__(
self.nside // factor,
self.nest,
frame=self.frame,
region=tuple(idx),
axes=copy.deepcopy(self.axes),
)
[docs] @classmethod
def create(
cls,
nside=None,
binsz=None,
nest=True,
frame="icrs",
region=None,
axes=None,
skydir=None,
width=None,
):
"""Create an HpxGeom object.
Parameters
----------
nside : int or `~numpy.ndarray`
HEALPix NSIDE parameter. This parameter sets the size of
the spatial pixels in the map. If nest is True, nside must be a
power of 2, less than 2**30.
binsz : float or `~numpy.ndarray`
Approximate pixel size in degrees. An NSIDE will be
chosen that corresponds to a pixel size closest to this
value. This option is superseded by nside.
nest : bool
True for HEALPIX "NESTED" indexing scheme, False for "RING" scheme
frame : {"icrs", "galactic"}, optional
Coordinate system, either Galactic ("galactic") or Equatorial ("icrs").
skydir : tuple or `~astropy.coordinates.SkyCoord`
Sky position of map center. Can be either a SkyCoord
object or a tuple of longitude and latitude in deg in the
coordinate system of the map.
region : str
HPX region string. Allows for partial-sky maps.
width : float
Diameter of the map in degrees. If set the map will
encompass all pixels within a circular region centered on
``skydir``.
axes : list
List of axes for non-spatial dimensions.
Returns
-------
geom : `~HpxGeom`
A HEALPix geometry object.
Examples
--------
>>> from gammapy.maps import HpxGeom, MapAxis
>>> axis = MapAxis.from_bounds(0,1,2)
>>> geom = HpxGeom.create(nside=16) # doctest: +SKIP
>>> geom = HpxGeom.create(binsz=0.1, width=10.0) # doctest: +SKIP
>>> geom = HpxGeom.create(nside=64, width=10.0, axes=[axis]) # doctest: +SKIP
>>> geom = HpxGeom.create(nside=[32,64], width=10.0, axes=[axis]) # doctest: +SKIP
"""
if nside is None and binsz is None:
raise ValueError("Either nside or binsz must be defined.")
if nside is None and binsz is not None:
nside = get_nside_from_pix_size(binsz)
if skydir is None:
lon, lat = (0.0, 0.0)
elif isinstance(skydir, tuple):
lon, lat = skydir
elif isinstance(skydir, SkyCoord):
lon, lat, frame = skycoord_to_lonlat(skydir, frame=frame)
else:
raise ValueError(f"Invalid type for skydir: {type(skydir)!r}")
if region is None and width is not None:
region = f"DISK({lon},{lat},{width/2})"
return cls(nside, nest=nest, frame=frame, region=region, axes=axes)
[docs] @classmethod
def from_hdu(cls, hdu, hdu_bands=None):
"""Create an HPX object from a BinTable HDU.
Parameters
----------
hdu : `~astropy.io.fits.BinTableHDU`
The FITS HDU
hdu_bands : `~astropy.io.fits.BinTableHDU`
The BANDS table HDU
Returns
-------
hpx : `~HpxGeom`
HEALPix geometry.
"""
# FIXME: Need correct handling of IMPLICIT and EXPLICIT maps
# if HPX region is not defined then geometry is defined by
# the set of all pixels in the table
if "HPX_REG" not in hdu.header:
pix = (hdu.data.field("PIX"), hdu.data.field("CHANNEL"))
else:
pix = None
return cls.from_header(hdu.header, hdu_bands=hdu_bands, pix=pix)
def _make_bands_cols(self):
cols = []
if self.nside.size > 1:
cols += [fits.Column("NSIDE", "I", array=np.ravel(self.nside))]
return cols
[docs] @staticmethod
def get_index_list(nside, nest, region):
"""Get list of pixels indices for all the pixels in a region.
Parameters
----------
nside : int
HEALPIX nside parameter
nest : bool
True for 'NESTED', False = 'RING'
region : str
HEALPIX region string
Returns
-------
ilist : `~numpy.ndarray`
List of pixel indices.
"""
import healpy as hp
# TODO: this should return something more friendly than a tuple
# e.g. a namedtuple or a dict
tokens = parse_hpxregion(region)
reg_type = tokens[0]
if reg_type == "DISK":
lon, lat = float(tokens[1]), float(tokens[2])
radius = np.radians(float(tokens[3]))
vec = coords_to_vec(lon, lat)[0]
ilist = hp.query_disc(nside, vec, radius, inclusive=False, nest=nest)
elif reg_type == "DISK_INC":
lon, lat = float(tokens[1]), float(tokens[2])
radius = np.radians(float(tokens[3]))
vec = coords_to_vec(lon, lat)[0]
fact = int(tokens[4])
ilist = hp.query_disc(
nside, vec, radius, inclusive=True, nest=nest, fact=fact
)
elif reg_type == "HPX_PIXEL":
nside_pix = int(tokens[2])
if tokens[1] == "NESTED":
ipix_ring = hp.nest2ring(nside_pix, int(tokens[3]))
elif tokens[1] == "RING":
ipix_ring = int(tokens[3])
else:
raise ValueError(f"Invalid ordering scheme: {tokens[1]!r}")
ilist = match_hpx_pix(nside, nest, nside_pix, ipix_ring)
else:
raise ValueError(f"Invalid region type: {reg_type!r}")
return ilist
@property
def width(self):
"""Width of the map"""
# TODO: simplify
import healpy as hp
if self.is_allsky:
width = 180.0
elif self.region == "explicit":
idx = unravel_hpx_index(self._ipix, self.npix_max)
nside = self._get_nside(idx)
ang = hp.pix2ang(nside, idx[0], nest=self.nest, lonlat=True)
dirs = SkyCoord(ang[0], ang[1], unit="deg", frame=self.frame)
width = np.max(dirs.separation(self.center_skydir))
else:
tokens = parse_hpxregion(self.region)
if tokens[0] in {"DISK", "DISK_INC"}:
width = float(tokens[3])
elif tokens[0] == "HPX_PIXEL":
pix_size = get_pix_size_from_nside(int(tokens[2]))
width = 2.0 * pix_size
return u.Quantity(width, "deg")
def _get_nside(self, idx):
if self.nside.size > 1:
return self.nside[tuple(idx[1:])]
else:
return self.nside
[docs] def to_wcs_geom(self, proj="AIT", oversample=2, width_pix=None):
"""Make a WCS projection appropriate for this HPX pixelization.
Parameters
----------
proj : str
Projection type of WCS geometry.
oversample : float
Oversampling factor for WCS map. This will be the
approximate ratio of the width of a HPX pixel to a WCS
pixel. If this parameter is None then the width will be
set from ``width_pix``.
width_pix : int
Width of the WCS geometry in pixels. The pixel size will
be set to the number of pixels satisfying ``oversample``
or ``width_pix`` whichever is smaller. If this parameter
is None then the width will be set from ``oversample``.
Returns
-------
wcs : `~gammapy.maps.WcsGeom`
WCS geometry
"""
from gammapy.maps import WcsGeom
pix_size = get_pix_size_from_nside(self.nside)
binsz = np.min(pix_size) / oversample
width = 2.0 * self.width.to_value("deg") + np.max(pix_size)
if width_pix is not None and int(width / binsz) > width_pix:
binsz = width / width_pix
if width > 90.0:
width = min(360.0, width), min(180.0, width)
axes = copy.deepcopy(self.axes)
return WcsGeom.create(
width=width,
binsz=binsz,
frame=self.frame,
axes=axes,
skydir=self.center_skydir,
proj=proj,
)
[docs] def to_wcs_tiles(self, nside_tiles=4, margin="0 deg"):
"""Create WCS tiles geometries from HPX geometry with given nside.
The HEALPix geom is divide into superpixels defined by nside_tiles,
which are then represented by a WCS geometry using a tangential
projection. The number of WCS tiles is given by the number of pixels
for the given nside_tiles.
Parameters
----------
nside_tiles : int
Nside for super pixel tiles. Usually nsi
margin : Angle
Width margin of the wcs tile
Returns
-------
wcs_tiles : list
List of WCS tile geoms.
"""
import healpy as hp
from gammapy.maps import WcsGeom
margin = u.Quantity(margin)
if nside_tiles >= self.nside:
raise ValueError(f"nside_tiles must be < {self.nside}")
if not self.is_allsky:
raise ValueError("to_wcs_tiles() is only supported for all sky geoms")
binsz = np.degrees(hp.nside2resol(self.nside)) * u.deg
hpx = self.to_image().to_nside(nside=nside_tiles)
wcs_tiles = []
for pix in range(int(hpx.npix)):
skydir = hpx.pix_to_coord([pix])
vtx = hp.boundaries(nside=hpx.nside, pix=pix, nest=hpx.nest, step=1)
lon, lat = hp.vec2ang(vtx.T, lonlat=True)
boundaries = SkyCoord(lon * u.deg, lat * u.deg, frame=hpx.frame)
# Compute maximum separation between all pairs of boundaries and take it
# as width
width = boundaries.separation(boundaries[:, np.newaxis]).max()
wcs_tile_geom = WcsGeom.create(
skydir=(float(skydir[0]), float(skydir[1])),
width=width + margin,
binsz=binsz,
frame=hpx.frame,
proj="TAN",
axes=self.axes,
)
wcs_tiles.append(wcs_tile_geom)
return wcs_tiles
[docs] def get_idx(
self,
idx=None,
local=False,
flat=False,
sparse=False,
mode="center",
axis_name=None,
):
# TODO: simplify this!!!
if idx is not None and np.any(np.array(idx) >= np.array(self.shape_axes)):
raise ValueError(f"Image index out of range: {idx!r}")
# Regular all- and partial-sky maps
if self.is_regular:
pix = [np.arange(np.max(self._npix))]
if idx is None:
for ax in self.axes:
if mode == "edges" and ax.name == axis_name:
pix += [np.arange(-0.5, ax.nbin, dtype=float)]
else:
pix += [np.arange(ax.nbin, dtype=int)]
else:
pix += [t for t in idx]
pix = np.meshgrid(*pix[::-1], indexing="ij", sparse=sparse)[::-1]
pix = self.local_to_global(pix)
# Non-regular all-sky
elif self.is_allsky and not self.is_regular:
shape = (np.max(self.npix),)
if idx is None:
shape = shape + self.shape_axes
else:
shape = shape + (1,) * len(self.axes)
pix = [np.full(shape, -1, dtype=int) for i in range(1 + len(self.axes))]
for idx_img in np.ndindex(self.shape_axes):
if idx is not None and idx_img != idx:
continue
npix = self._npix[idx_img]
if idx is None:
s_img = (slice(0, npix),) + idx_img
else:
s_img = (slice(0, npix),) + (0,) * len(self.axes)
pix[0][s_img] = np.arange(self._npix[idx_img])
for j in range(len(self.axes)):
pix[j + 1][s_img] = idx_img[j]
pix = [p.T for p in pix]
# Explicit pixel indices
else:
if idx is not None:
npix_sum = np.concatenate(([0], np.cumsum(self._npix)))
idx_ravel = np.ravel_multi_index(idx, self.shape_axes)
s = slice(npix_sum[idx_ravel], npix_sum[idx_ravel + 1])
else:
s = slice(None)
pix_flat = unravel_hpx_index(self._ipix[s], self.npix_max)
shape = (np.max(self.npix),)
if idx is None:
shape = shape + self.shape_axes
else:
shape = shape + (1,) * len(self.axes)
pix = [np.full(shape, -1, dtype=int) for _ in range(1 + len(self.axes))]
for idx_img in np.ndindex(self.shape_axes):
if idx is not None and idx_img != idx:
continue
npix = int(self._npix[idx_img])
if idx is None:
s_img = (slice(0, npix),) + idx_img
else:
s_img = (slice(0, npix),) + (0,) * len(self.axes)
if self.axes:
m = np.all(
np.stack([pix_flat[i + 1] == t for i, t in enumerate(idx_img)]),
axis=0,
)
pix[0][s_img] = pix_flat[0][m]
else:
pix[0][s_img] = pix_flat[0]
for j in range(len(self.axes)):
pix[j + 1][s_img] = idx_img[j]
pix = [p.T for p in pix]
if local:
pix = self.global_to_local(pix)
if flat:
pix = tuple([p[p != INVALID_INDEX.int] for p in pix])
return pix
[docs] def region_mask(self, regions):
"""Create a mask from a given list of regions
The mask is filled such that a pixel inside the region is filled with
"True". To invert the mask, e.g. to create a mask with exclusion regions
the tilde (~) operator can be used (see example below).
Parameters
----------
regions : str, `~regions.Region` or list of `~regions.Region`
Region or list of regions (pixel or sky regions accepted).
A region can be defined as a string ind DS9 format as well.
See http://ds9.si.edu/doc/ref/region.html for details.
Returns
-------
mask_map : `~gammapy.maps.WcsNDMap` of boolean type
Boolean region mask
"""
from gammapy.maps import Map, RegionGeom
if not self.is_regular:
raise ValueError("Multi-resolution maps not supported yet")
# TODO: use spatial coordinates only...
geom = RegionGeom.from_regions(regions)
coords = self.get_coord()
mask = geom.contains(coords)
return Map.from_geom(self, data=mask)
[docs] def get_coord(
self, idx=None, flat=False, sparse=False, mode="center", axis_name=None
):
if mode == "edges" and axis_name is None:
raise ValueError("Mode 'edges' requires axis name to be defined")
pix = self.get_idx(
idx=idx, flat=flat, sparse=sparse, mode=mode, axis_name=axis_name
)
data = self.pix_to_coord(pix)
coords = MapCoord.create(
data=data, frame=self.frame, axis_names=self.axes.names
)
return coords
[docs] def contains(self, coords):
idx = self.coord_to_idx(coords)
return np.all(np.stack([t != INVALID_INDEX.int for t in idx]), axis=0)
[docs] def solid_angle(self):
"""Solid angle array (`~astropy.units.Quantity` in ``sr``).
The array has the same dimensionality as ``map.nside``
since all pixels have the same solid angle.
"""
import healpy as hp
return Quantity(hp.nside2pixarea(self.nside), "sr")
def __repr__(self):
lon, lat = self.center_skydir.data.lon.deg, self.center_skydir.data.lat.deg
return (
f"{self.__class__.__name__}\n\n"
f"\taxes : {self.axes_names}\n"
f"\tshape : {self.data_shape[::-1]}\n"
f"\tndim : {self.ndim}\n"
f"\tnside : {self.nside[0]}\n"
f"\tnested : {self.nest}\n"
f"\tframe : {self.frame}\n"
f"\tprojection : {self.projection}\n"
f"\tcenter : {lon:.1f} deg, {lat:.1f} deg\n"
)
[docs] def is_allclose(self, other, rtol_axes=1e-6, atol_axes=1e-6):
"""Compare two data IRFs for equivalency
Parameters
----------
other : `HpxGeom`
Geom to compare against
rtol_axes : float
Relative tolerance for the axes comparison.
atol_axes : float
Relative tolerance for the axes comparison.
Returns
-------
is_allclose : bool
Whether the geometry is all close.
"""
if not isinstance(other, self.__class__):
return TypeError(f"Cannot compare {type(self)} and {type(other)}")
if self.is_allsky and not other.is_allsky:
return False
if self.data_shape != other.data_shape:
return False
axes_eq = self.axes.is_allclose(other.axes, rtol=rtol_axes, atol=atol_axes)
hpx_eq = (
self.nside == other.nside
and self.frame == other.frame
and self.order == other.order
and self.nest == other.nest
)
return axes_eq and hpx_eq
def __eq__(self, other):
if not isinstance(other, self.__class__):
return False
return self.is_allclose(other=other)
def __ne__(self, other):
return not self.__eq__(other)