# Licensed under a 3-clause BSD style license - see LICENSE.rst
from __future__ import absolute_import, division, print_function, unicode_literals
import sys
import numpy as np
import logging
from astropy.io import fits
from astropy.table import Table
from astropy.utils import lazyproperty
from ..utils.scripts import make_path
__all__ = ["HDULocation", "HDUIndexTable"]
log = logging.getLogger(__name__)
[docs]class HDULocation(object):
"""HDU localisation, loading and Gammapy object mapper.
This represents one row in `HDUIndexTable`.
It's more a helper class, that is wrapped by `~gammapy.data.DataStoreObservation`,
usually those objects will be used to access data.
See also :ref:`gadf:hdu-index`.
"""
def __init__(
self, obs_id, hdu_type, hdu_class, base_dir, file_dir, file_name, hdu_name
):
self.obs_id = obs_id
self.hdu_type = hdu_type
self.hdu_class = hdu_class
self.base_dir = base_dir
self.file_dir = file_dir
self.file_name = file_name
self.hdu_name = hdu_name
[docs] def info(self, file=None):
"""Print some summary info to stdout."""
if not file:
file = sys.stdout
print("OBS_ID = {}".format(self.obs_id), file=file)
print("HDU_TYPE = {}".format(self.hdu_type), file=file)
print("HDU_CLASS = {}".format(self.hdu_class), file=file)
print("BASE_DIR = {}".format(self.base_dir), file=file)
print("FILE_DIR = {}".format(self.file_dir), file=file)
print("FILE_NAME = {}".format(self.file_name), file=file)
print("HDU_NAME = {}".format(self.hdu_name), file=file)
[docs] def path(self, abs_path=True):
"""Full filename path.
Include ``base_dir`` if ``abs_path`` is True.
"""
if abs_path:
return make_path(self.base_dir) / self.file_dir / self.file_name
else:
return make_path(self.file_dir) / self.file_name
[docs] def get_hdu(self):
"""Get HDU."""
filename = str(self.path(abs_path=True))
# Here we're intentionally not calling `with fits.open`
# because we don't want the file to remain open.
hdu_list = fits.open(filename, memmap=False)
return hdu_list[self.hdu_name]
[docs] def load(self):
"""Load HDU as appropriate class.
TODO: this should probably go via an extensible registry.
"""
hdu_class = self.hdu_class
filename = self.path()
hdu = self.hdu_name
if hdu_class == "events":
from ..data import EventList
return EventList.read(filename, hdu=hdu)
elif hdu_class == "gti":
from ..data import GTI
return GTI.read(filename, hdu=hdu)
elif hdu_class == "aeff_2d":
from ..irf import EffectiveAreaTable2D
return EffectiveAreaTable2D.read(filename, hdu=hdu)
elif hdu_class == "edisp_2d":
from ..irf import EnergyDispersion2D
return EnergyDispersion2D.read(filename, hdu=hdu)
elif hdu_class == "psf_table":
from ..irf import PSF3D
return PSF3D.read(filename, hdu=hdu)
elif hdu_class == "psf_3gauss":
from ..irf import EnergyDependentMultiGaussPSF
return EnergyDependentMultiGaussPSF.read(filename, hdu=hdu)
elif hdu_class == "psf_king":
from ..irf import PSFKing
return PSFKing.read(filename, hdu=hdu)
elif hdu_class == "bkg_2d":
from ..irf import Background2D
return Background2D.read(filename, hdu=hdu)
elif hdu_class == "bkg_3d":
from ..irf import Background3D
return Background3D.read(filename, hdu=hdu)
else:
raise ValueError("Invalid hdu_class: {}".format(hdu_class))
[docs]class HDUIndexTable(Table):
"""HDU index table.
See :ref:`gadf:hdu-index`.
"""
VALID_HDU_TYPE = ["events", "gti", "aeff", "edisp", "psf", "bkg"]
"""Valid values for `HDU_TYPE`."""
VALID_HDU_CLASS = [
"events",
"gti",
"aeff_2d",
"edisp_2d",
"psf_table",
"psf_3gauss",
"psf_king",
"bkg_2d",
"bkg_3d",
]
"""Valid values for `HDU_CLASS`."""
[docs] @classmethod
def read(cls, filename, **kwargs):
"""Read :ref:`gadf:hdu-index`.
Parameters
----------
filename : `~gammapy.extern.pathlib.Path`, str
Filename
"""
filename = make_path(filename)
table = super(HDUIndexTable, cls).read(str(filename), **kwargs)
table.meta["BASE_DIR"] = filename.parent.as_posix()
return table
@property
def base_dir(self):
"""Base directory."""
return make_path(self.meta.get("BASE_DIR", ""))
[docs] def hdu_location(self, obs_id, hdu_type=None, hdu_class=None):
"""Create `HDULocation` for a given selection.
Parameters
----------
obs_id : int
Observation ID
hdu_type : str
HDU type (see `~gammapy.data.HDUIndexTable.VALID_HDU_TYPE`)
hdu_class : str
HDU class (see `~gammapy.data.HDUIndexTable.VALID_HDU_CLASS`)
Returns
-------
location : `~gammapy.data.HDULocation`
HDU location
"""
self._validate_selection(obs_id=obs_id, hdu_type=hdu_type, hdu_class=hdu_class)
idx = self.row_idx(obs_id=obs_id, hdu_type=hdu_type, hdu_class=hdu_class)
if len(idx) == 1:
idx = idx[0]
elif len(idx) == 0:
raise IndexError(
"No HDU found matching: OBS_ID = {}, HDU_TYPE = {}, HDU_CLASS = {}"
"".format(obs_id, hdu_type, hdu_class)
)
else:
idx = idx[0]
log.warning(
"Found multiple HDU matching: OBS_ID = {}, HDU_TYPE = {}, HDU_CLASS = {}."
"".format(obs_id, hdu_type, hdu_class)
+ " Returning the first entry, which has HDU_TYPE = {} and HDU_CLASS = {}"
"".format(self[idx]["HDU_TYPE"], self[idx]["HDU_CLASS"])
)
return self.location_info(idx)
def _validate_selection(self, obs_id, hdu_type, hdu_class):
"""Validate HDU selection.
The goal is to give helpful error messages to the user.
"""
if hdu_type is None and hdu_class is None:
raise ValueError("You have to specify `hdu_type` or `hdu_class`.")
if hdu_type and hdu_type not in self.VALID_HDU_TYPE:
msg = "Invalid hdu_type: {}. ".format(hdu_type)
valid = [str(_) for _ in self.VALID_HDU_TYPE]
msg += "Valid values are: {}".format(valid)
raise ValueError(msg)
if hdu_class and hdu_class not in self.VALID_HDU_CLASS:
msg = "Invalid hdu_class: {}. ".format(hdu_class)
valid = [str(_) for _ in self.VALID_HDU_CLASS]
msg += "Valid values are: {}".format(valid)
raise ValueError(msg)
if obs_id not in self["OBS_ID"]:
raise IndexError("No entry available with OBS_ID = {}".format(obs_id))
[docs] def row_idx(self, obs_id, hdu_type=None, hdu_class=None):
"""Table row indices for a given selection.
Parameters
----------
obs_id : int
Observation ID
hdu_type : str
HDU type (see `~gammapy.data.HDUIndexTable.VALID_HDU_TYPE`)
hdu_class : str
HDU class (see `~gammapy.data.HDUIndexTable.VALID_HDU_CLASS`)
Returns
-------
idx : list of int
List of row indices matching the selection.
"""
selection = self["OBS_ID"] == obs_id
if hdu_class:
is_hdu_class = self._hdu_class_stripped == hdu_class
selection &= is_hdu_class
if hdu_type:
is_hdu_type = self._hdu_type_stripped == hdu_type
selection &= is_hdu_type
idx = np.where(selection)[0]
return list(idx)
[docs] def location_info(self, idx):
"""Create `HDULocation` for a given row index."""
row = self[idx]
return HDULocation(
obs_id=row["OBS_ID"],
hdu_type=row["HDU_TYPE"].strip(),
hdu_class=row["HDU_CLASS"].strip(),
base_dir=self.base_dir.as_posix(),
file_dir=row["FILE_DIR"].strip(),
file_name=row["FILE_NAME"].strip(),
hdu_name=row["HDU_NAME"].strip(),
)
@lazyproperty
def _hdu_class_stripped(self):
return np.array([_.strip() for _ in self["HDU_CLASS"]])
@lazyproperty
def _hdu_type_stripped(self):
return np.array([_.strip() for _ in self["HDU_TYPE"]])
@lazyproperty
def obs_id_unique(self):
"""Observation IDs (unique)."""
return np.unique(np.sort(self["OBS_ID"]))
@lazyproperty
def hdu_type_unique(self):
"""HDU types (unique)."""
return list(np.unique(np.sort([_.strip() for _ in self["HDU_TYPE"]])))
@lazyproperty
def hdu_class_unique(self):
"""HDU classes (unique)."""
return list(np.unique(np.sort([_.strip() for _ in self["HDU_CLASS"]])))
[docs] def summary(self):
"""Summary report (str)"""
obs_id = self.obs_id_unique
return "\n".join(
[
"HDU index table:",
"BASE_DIR: {}".format(self.base_dir),
"Rows: {}".format(len(self)),
"OBS_ID: {} -- {}".format(obs_id[0], obs_id[-1]),
"HDU_TYPE: {}".format(self.hdu_type_unique),
"HDU_CLASS: {}".format(self.hdu_class_unique),
]
)